PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00590g43005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19919.6 Da    PI: 9.3888
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00590g43005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.42.4e-151760346
                              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                              ie +  r++tfskRr  +  KA+EL +LC++++ vi+fs+t+k 
  Peinf101Scf00590g43005.1 17 IEKEDDRYTTFSKRRSSLYNKASELVTLCNVDIGVILFSPTDKP 60
                              899999**********************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.016767IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-21766IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.29E-22878IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-12929IPR002100Transcription factor, MADS-box
PfamPF003191.9E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEEKKTKGRQ KIPMVKIEKE DDRYTTFSKR RSSLYNKASE LVTLCNVDIG VILFSPTDKP  60
FSFFHPTVEA VIDPFLNPNR QLSENTRLVE THARNKVNQL YNKRNEFDTI EAAANAQALS  120
YDKMKEIRHR GWWESIEQFN ADEVTKFEAW LNATNFNMER RLKQLKNEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474013.11e-87PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLK4BSX19e-68K4BSX1_SOLLC; Uncharacterized protein
STRINGSolyc04g056740.1.13e-67(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-30AGAMOUS-like 61